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The open-source application Bio7 is a software for ecological simulation models, image analysis and statistical analysis.[1] Built upon the RCP framework of Eclipse it embeds several tools and programming languages for the analysis of complex ecological systems. Several Java based scripting languages (Groovy, BeanShell, Python/Jython, JavaScript, ImageJ Macro) and the Java language can be used from within Bio7 for the creation of simulation models and analysis tasks.
In addition, Bio7 also contains a complete graphical user interface for the statistical R programming language[2] and the scientific image analysis tool ImageJ[3] with special functions to send image data from ImageJ to R or R data to ImageJ. It is considered a diverging fork of ImageJ to improve the UI integration.[4]
References
^Guiet, Romain; Burri, Olivier; Seitz, Arne (2019), Rebollo, Elena; Bosch, Manel (eds.), "Open Source Tools for Biological Image Analysis", Computer Optimized Microscopy: Methods and Protocols, vol. 2040, New York, NY: Springer, pp. 23–37, doi:10.1007/978-1-4939-9686-5_2, ISBN978-1-4939-9686-5, PMID31432473
^Austenfeld, Marcel, und Wolfram Beyschlag. „A Graphical User Interface for R in a Rich Client Platform for Ecological Modeling". Journal of Statistical Software 49, Nr. 4 (2012): 1–19. doi:10.18637/jss.v049.i04
^Austenfeld M, Beyschlag W: The Use of ImageJ within an Ecological Modeling Platform, ImageJ User and Developer Conference 2010, Luxembourg, Conference Proceedings, 211–216.
